原著論文(1998年以降)
- Kanesaka, Y., Inoue, K., Tomita, Y., Yamaoka, S., and Araki, T.* (2023)
Circadian clock does not play an essential role in daylength measurement for
growth-phase transition in Marchantia polymorpha.
Frontiers in Plant Science 14, 1275503.
PubMed
- Saito, M., Momiki, R., Ebine, K., Yoshitake, Y., Nishihama, R., Miyakawa, T.,
Nakano, T., Mitsuda, N., Araki, T., Kohchi, T., Yamaoka, S.* (2023)
A bHLH heterodimer regulates germ cell differentiation in land plant
gametophytes.
Current Biology 33(20 Nov. issue) 1-8, e1-e6.
PubMed
京都大学HP
研究科HP
- Torii, K., Inoue, K., Bekki, K., Haraguchi, K., Kubo, M., Kondo, Y., Suzuki, T.,
Kubota, A., Uemoto, K., Shimizu, H., Saito, M., Fukuda, H., Araki, T., and Endo,
M.* (2022)
A guiding role of the Arabidopsis circadian clock in cell differentiation
revealed by time-series single-cell RNA sequencing.
Cell Reports 40(2), 111059.
K.T. and K.I. are co-first authors.
PubMed
- Uemoto, K, Mori, E, Yamauchi, S, Kubota, A, Takahashi, N, Egashira, H, Kunimoto, Y,
Araki, T, Takemiya, A, Ito, H, Endo, M* (2021)
Root PRR7 improves the accuracy of the shoot circadian clock through nutrient
transport.
Plant & Cell Physiology 64(3), 352-362.
PubMed
- Yamaoka, S.*, Inoue, K., and Araki, T.* (2021)
Regulation of gametangia and gametangiophore initiation in the liverwort
Marchantia polymorpha.
Plant Reproduction 34(4), 297-306.
PubMed
- Torii, K., Kubota, A., Araki, T., and Endo, M.* (2020)
Time-series single-cell RNA-seq data reveals auxin fluctuation during
endocycle.
Plant & Cell Physiology 61(2), 243-254.
PubMed
Featured in Research Highlight of the issue.
- Tuzuki, M., Futagami, K., Shimamura, M., Inoue, C., Kunimoto, K., Oogami, T.,
Tomita, Y., Inoue, K., Kohchi, T., Yamaoka, S., Araki, T., Hamada, T*., and
Watanabe, Y. (2019)
An early arising role of microRNA156/529c-SPL module in reproductive
development revealed by the liverwort Marchantia polymorpha.
Current Biology 29(19), 3307-3314., e1-e5.
PubMed
プレスリリース
- Hisanaga, T., Yamaoka, S., Kawashima, T., Higo, A., Nakajima, K., Araki, T., Kohchi,
T., and Berger, F. (2019)
Building new insights in plant gametogenesis from an evolutionary
perspective.
Nature Plants 5(7), 663-669.
T.H., S.Y., and T.Ka. are co-first authors.
PubMed
- Inoue, K., Nishihama, R., Araki, T., and Kohchi, T. (2019)
Reproductive induction is a far-red high irradiance response that is mediated by
phytochrome and PHYTOCHROME INTERACTING FACTOR in Marchantia
polymorpha.
Plant & Cell Physiology 60(5), 1136-1145.
K.I. and T.K. are co-corresponding authors.
PubMed
Featured in Research Highlight of the issue.
- Higo, A., Kawashima, T., Borg, M., Zhao, M., López-Vidriero, I., Sakayama, H.,
Montgomery, S. A., Sekimoto, H., Hackenberg, D., Shimamura, M., Nishiyama, T.,
Sakakibara, K., Tomita, Y., Togawa, T., Kunimoto, K., Osakabe, A., Suzuki, Y.,
Yamato, K. T., Ishizaki, K., Nishihama, R., Kohchi, T., Franco-Zorrilla, J. M.,
Twell, D., Berger, F., and Araki, T. (2018)
Transcription factor DUO1 generated by neo-functionalization is associated with
evolution of sperm differentiation in plants.
Nature Communications
9, 5283, 1-13.
A.H. and T.K. are co-first authors, F.B. and T.A. are co-corresponding
authors
PubMed
プレスリリース
- Inoue, K., Araki, T., and Endo, M. (2018)
Oscillator networks with tissue-specific circadian clocks in
plants.
Seminars in Cell and Developmental Biology 83, 78-85.
PubMed
- Endo, M., Yoshida, M., Sasaki, Y., Negishi, K., Horikawa, K., Daimon, Y., Kurotani,
K.-i., Notaguchi, M., Abe, M., and Araki, T. (2018)
Reevaluation of florigen transport kinetics with separation of function by
mutations that uncouple flowering initiation and long-distance
transport.
Plant & Cell Physiology 59, (8), 1621-1629.
PubMed
Featured in Research Highlight of the issue.
Commentary by Lee and Imaizumi (2018): Plant & Cell Physiology 59 (8),
1487-1489.
PubMed
- Uemoto, K., Araki, T., and Endo, M. (2018)
Isolation of Arabidopsis palisade and spongy mesophyll cells.
Yamaguchi,
N. (ed.) Plant Transcription Factors. Methods and Protocols. Methods in
Molecular Biology 1830, 141-148.
PubMed
- Negishi, K., Endo, M., Abe, M., and Araki, T. (2018)
SODIUM POTASSIUM ROOT DEFECTIVE1 regulates FLOWERING LOCUS T
expression via microRNA156-SQUAMOSA PROMOTER BINDING PROTEIN-LIKE3 module
in response to potassium conditions.
Plant & Cell Physiology 59,
(2), 404-413.
PubMed
Featured in Research Highlight of the issue.
- Inoue, K., Araki, T., and Endo, M. (2018)
Circadian clock during plant development.
Journal of Plant Research
131, (1), 59-66.
PubMed
Correction: Journal of Plant Research 131 (3), 571 (2018).
PubMed
- Bowman, J.L., Kohchi, T., Yamato, K.T., Jenkins, J., Shu, S., Ishizaki, K., Yamaoka,
S., Nishihama, R., Nakamura, Y., Berger, F., Adam, C., Aki, S.S., Althoff, F.,
Araki, T., Arteaga-Vazquez, M.A., Balasubrmanian, S., Barry, K., Bauer, D.,
Boehm, C.R., Briginshaw, L., Caballero-Perez, J., Catarino, B., Chen, F.,
Chiyoda, S., Chovatia, M., Davies, K.M., Delmans, M., Demura, T., Dierschke, T.,
Dolan, L., Dorantes-Acosta, A.E., Eklund, D. M., Florent, S.N., Flores-Sandoval,
E., Fujiyama, A., Fukuzawa, H., Galik, B., Grimanelli, D., Grimwood, J.,
Grossniklaus, U., Hamada, T., Haseloff, J., Hetherington, A.J., Higo, A.,
Hirakawa, Y., Hundley, H.N., Ikeda, Y., Inoue, K., Inoue, S.-i., Ishida, S.,
Jia, Q., Kakita, M., Kanazawa, T., Kawai, Y., Kawashima, T., Kennedy, M.,
Kinose, K., Kinoshita, T., Kohara, Y., Koide, E., Komatsu, K., Kopischke, S.,
Kubo, M., Kyozuka, J., Lagercrantz, U., Lin, S.-S., Lindquist, E., Lipzen, A.M.,
Lu, C.-W., De Luna, E., Martienssen, R.A., Minamino, N., Mizutani, M., Mizutani,
M., Mochizuki, N., Monte, I., Mosher, R., Nagasaki, H., Nakagami, H., Naramoto,
S., Nishitani, K., Ohtani, M., Okamoto, T., Okumura, M., Phillips, J., Pollak,
B., Reinders, A., Rövekamp, M., Sano, R., Sawa, S., Schmid, M.W., Shirakawa, M.,
Solano, R., Spunde, A., Suetsugu, N., Sugano, S., Sugiyama, A., Sun, R., Suzuki,
Y., Takenaka, M., Takezawa, D., Tomogane, H., Tsuzuki, M., Ueda, T., Umeda, M.,
Ward, J.M., Watanabe, Y., Yazaki, K., Yokoyama, R., Yoshitake, Y., Yotsui, I.,
Zachgo, S., and Schmutz, J. (2017)
Insights into land plant evolution garnered from the Marchantia
polymorpha genome.
Cell 171, (2), 287-304.
PubMed
- Inoue, K., Araki, T., and Endo, M. (2017)
Integration of input signals into the gene network in the plant circadian
clock.
Plant & Cell Physiology 58, (6), 977-982.
PCP
Featured in Research Highlight of the issue.
- Endo, M., Shimizu, H., and Araki, T. (2016)
Rapid and simple isolation of vascular, epidermal and mesophyll cells from plant
leaf tissue.
Nature Protocols 11, (8), 1388-1395.
PubMed
- Endo, M., Araki, T., and Nagatani, A. (2016)
Tissue-specific regulation of flowering by photoreceptors.
Cellular and
Molecular Life Sciences 73, (4), 829-839.
PubMed
- Shimizu, H., Torii, K., Araki, T., and Endo, M. (2016)
Importance of epidermal clocks for regulation of hypocotyl elongation through
PIF4 and IAA2.
Plant Signaling & Behavior 11, (2), e1143999,
1-2.
PubMed
- Higo, A., Niwa, M., Yamato, K. T., Yamada, L., Sawada, H., Sakamoto, T., Kurata, T.,
Shirakawa, M., Endo, M., Shigenobu, S., Ishizaki, K., Nishihama, R., Kohchi, T.,
and Araki, T. (2016)
Transcriptional framework of male gametogenesis in the liverwort Marchantia
polymorpha L.
Plant & Cell Physiology 57, (2),
325-338.
PubMed
- Bowman, J.L., Araki, T., Arteaga-Vazquez, M., Berger, F., Dolan, L., Haseloff, J.,
Ishizaki, K., Kyozuka, J., Lin, S.-S., Nagasaki, H., Nakagami, H., Nakajima, K.,
Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura, M., Solano, R., Tsukaya, H.,
Ueda, T., Watanabe, Y., Yamato, K.T., Zachgo, S., and Kohchi, T. (2016)
The naming of names: guidelines for gene nomenclature in
Marchantia.
Plant & Cell Physiology 57, (2), 257-261.
PubMed
- Bowman, J.L., Araki, T., and Kohchi, T. (2016)
Marchantia: past, present and future.
Plant & Cell Physiology
57, (2), 205-209.
PubMed
- Kawamoto, N., Endo, M., and Araki, T. (2015)
Expression of a kinase-dead form of CPK33 involved in florigen complex formation
causes delayed flowering.
Plant Signaling & Behavior 10, (12),
e1143999, 1-2.
PubMed
- Shimizu, H., Katayama, K., Koto, T., Torii, K., Araki, T., and Endo, M. (2015)
Decentralized circadian clocks process thermal and photoperiodic cues in
specific tissues.
Nature Plants 1, Article Number 15163, 1-6.
PubMed
Author Correction: Nature Plants 4 (12), 1126 (2018).
Commentary by McClung (2015): Nature Plants 1 Article Number:
15172.
PubMed
プレスリリース
- Abe, M., Kaya, H., Watanabe-Taneda, A., Shibuta, M., Yamaguchi, A., Sakamoto, T.,
Kurata, T., Ausin, I., Araki, T., and Alonso-Blanco, C. (2015)
FE, a phloem-specific Myb-related protein, promotes flowering through
transcriptional activation of FLOWERING LOCUS T and FLOWERING LOCUS T
INTERACTING PROTEIN 1.
Plant Journal 83, (6),
1059-1068.
PubMed
- Shimizu, H., Araki, T., and Endo, M. (2015)
Photoperiod sensitivity of the Arabidopsis circadian clock is
tissue-specific.
Plant Signaling & Behavior 10, (6), e1010933,
1-2.
PubMed
- Kawamoto, N., Sasabe, M., Endo, M., Machida, Y., and Araki, T. (2015)
Calcium-dependent protein kinases responsible for the phosphorylation of a bZIP
transcription factor FD crucial for the florigen complex
formation.
Scientific Reports 5, 8341. 1-9.
PubMed
- Endo, M., Shimizu, H., Nohales, M.A., Araki, T., and Kay, S.A. (2014)
Tissue-specific clocks in Arabidopsis show asymmetric coupling.
Nature
515, (7527), 419-422.
PubMed
Commentary by Martí and Webb (2015): Nature 515 (7527), 352-353.
PubMed
プレスリリース
- Endo, M., Kudo, D., Koto, T., Shimizu, H., and Araki, T. (2014)
Light-dependent destabilization of PHL in Arabidopsis.
Plant Signaling &
Behavior 9 (2), e28118.
ME and TA are co-corresponding authors.
PubMed
- Niwa, M., Endo, M., and Araki, T. (2013)
Florigen is involved in axillary bud development at multiple stages in
Arabidopsis.
Plant Signaling & Behavior 8 (11), e27167.
PubMed
- Endo, M., Tanigawa, Y., Murakami, T., Araki, T., and Nagatani, A.
(2013)
PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through
physical interactions with phytochrome B and CONSTANS.
Proceedings of
the National Academy of Sciences of the United States of America 110
(44), 18017-18022.
ME, TA, and NA are co-corresponding authors.
PubMed
京都大学 HP の紹介記事
- Yoo, S.-C., Chen, C., Rojas, M., Daimon, Y., Ham, B.-K., Araki, T., and Lucas, W.
(2013)
Phloem long-distance delivery of FLOWERING LOCUS T (FT) to the
apex.
Plant Journal 75 (3), 456-468.
TA and WL are co-corresponding authors.
PubMed
- Niwa, M., Daimon, Y., Kurotani, K., Higo, A., Pruneda-Paz, J.L., Breton, G.,
Mitsuda, N., Kay, S.A., Ohme-Takagi, M., Endo, M., and Araki, T. (2013)
BRANCHED1 interacts with FLOWERING LOCUS T to repress the floral transition of
the axillary meristems in Arabidopsis.
Plant Cell 25 (4),
1228-1242.
PubMed
Free
Full Text (Open Access) Featured in "In Brief" section of the issue.
"Author profile (Masaki Niwa)"
- Hiraoka, K., Yamaguchi, A., Abe, M., and Araki, T. (2013)
The florigen genes FT and TSF modulate lateral shoot outgrowth in Arabidopsis
thaliana.
Plant & Cell Physiology 54 (3), 352-368.
PubMed
Free Full Text
- Machida, Y., Fukaki, H., and Araki, T. (2013)
Plant meristems and organogenesis: the new era of plant developmental research.
(Editorial)
Plant & Cell Physiology 54 (3), 295-301.
PubMed
Free Full Text
- Imura, Y., Kobayashi, Y., Yamamoto, S., Furutani, M., Tasaka, M., Abe, M., and
Araki, T. (2012)
CRYPTIC PRECOCIOUS/MED12 is a novel flowering regulator with multiple target
steps in Arabidopsis.
Plant & Cell Physiology 53 (2), 287-303.
PubMed
Free Full Text (Open Access)
Selected as an "Editor-in-Chief's Choice Article"
- Iwata, H., Gaston, A., Remay, A., Thouroude, T., Jeauffre, J., Kawamura, K., Oyant,
L.H., Araki, T., Denoyes, B., and Foucher, F. (2012)
The TFL1 homologue KSN is a regulator of continuous flowering in
rose and strawberry.
Plant Journal 69 (1), 116-125.
PubMed
- Nishikawa, F., Endo, T., Shimada, H., Fujii, H., Shimizu, T., Kobayashi, Y., Araki,
T., and Omura, M. (2010)
Transcriptional changes in CiFT-introduced transgenic trifoliate orange
(Poncirus trifoliata L. Raf.).
Tree Physiology 30 (3),
431-439.
PubMed
- Notaguchi, M., Daimon, Y., Abe, M., and Araki, T. (2009)
Adaptation of a seedling micro-grafting technique to the study of long-distance
signaling in flowering of Arabidopsis thaliana.
Journal of Plant
Research 122 (2), 201-214.
PubMed
2010 年度 日本植物学会 JPR 論文賞
講評(日本植物学会 HP)
賞状
- Endo, T., Shimada, T., Fujii, H., Nishikawa, F., Sugiyama, A., Nakano, M., Shimizu,
T., Kobayashi, Y., Araki, T., Pena, L., and Omura, M. (2009)
Development of a CiFT co-expression system for functional analysis of genes in
Citrus flowers and fruit.
Journal of the Japanese Society for
Horticultural Science 78 (1), 74-83.
Abstract
(journal HP)
平成22年度 園芸学会年間優秀論文賞 賞状
- Notaguchi, M., Daimon, Y., Abe, M., and Araki, T. (2009)
Graft-transmissible action of Arabidopsis FLOWERING LOCUS T protein to
promote flowering.
Plant Signaling & Behavior 4 (2), 123-125.
Addendum to: Notaguchi, M. et. al. (2008) Plant & Cell
Physiology 49 (11), 1645-1658.
PubMed
Free Full Text
- Notaguchi, M., Abe, M., Kimura, T., Daimon, Y., Kobayashi, T., Yamaguchi, A.,
Tomita, Y., Dohi, K., Mori, M., and Araki, T. (2008)
Long-distance, graft-transmissible action of Arabidopsis FLOWERING LOCUS T
protein to promote flowering.
Plant & Cell Physiology 49 (11),
1645-1658.
PubMed
Free Full Text (Open Access)
Corrigendum (copyright information): Plant & Cell Physiology
49 (12), 1922.
- Tsukaya, H., Tsujino, R., Ikeuchi, M., Isshiki, Y., Kono, M. Takeuchi, T., and
Araki, T. (2007)
Morphological variation in leaf shape in Ainsliaea
apiculata with special reference to the endemic characters of
populations on Yakushima Island, Japan.
Journal of Plant Research 120
(3), 351-358.
PubMed
- Ikeda, Y., Kobayashi, Y., Yamaguchi, A., Abe, M., and Araki, T. (2007)
Molecular basis of late-flowering phenotype caused by dominant epi-alleles
of the FWA locus in Arabidopsis.
Plant & Cell Physiology
48 (2), 205-220. PubMed Free Full Text
Erratum: Plant
& Cell Physiology 48 (3), 562.
- Endo, M., Ishikawa, Y., Osakabe, K., Nakayama, S., Kaya, H., Araki, T., Shibahara,
K., Abe, K., Ichikawa, H., Valentine, L., Hohn, B., and Toki, S.
(2006)
Increased frequency of homologous recombination and T-DNA
integration in Arabidopsis CAF-1 mutants.
EMBO Journal 25
(23), 5579-5590. PubMed
- Kieber, J. and Araki, T. (2006)
Cell signaling and gene regulation (Editorial
Overview).
Current Opinion Plant Biology 9 (5), 445-447.
- Ono, T., Kaya, H., Takeda, S., Abe, M., Ogawa, Y., Kato, M., Kakutani, T.,
Mittelsten Scheid, O., Araki, T., and Shibahara, K. (2006)
Chromatin
assembly factor-1 insures the stable maintenance of silent chromatin states in
Arabidopsis.
Genes to Cells 11 (2), 153-162. PubMed Cover
- Endo, T., Shimada, T., Fujii, H., Kobayashi, Y., Araki, T., and Omura, M.
(2005)
Ectopic expression of an FT homolog from Citrus
confers an early flowering phenotype on trifoliate orange (Poncirus
trifoliata L. Raf.).
Transgenic Research 14 (5),
703-712. PubMed
- Abe, M., Kobayashi, Y., Yamamoto, S., Daimon, Y., Yamaguchi, A., Ikeda, Y.,
Ichinoki, H., Notaguchi, M., Goto, K., and Araki, T. (2005)
FD, a bZIP
protein mediating signals from the floral pathway integrator FT at the shoot
apex.
Science 309 (5737), 1052-1056.
First three authors (MA,
YK, SY) are co-first authors.
PubMed
プレスリリース
科学技術振興機構 CREST プレス発表
Science誌が選ぶ2005年の十大"Breakthrough of the
Year"の3番目("Blooming marvelous")に選ばれました
朝日新聞の記事(2005年12月31日)
featured by Science(August 12 2005)
featured by Nature Genetics(October 2005)
- Yamaguchi, A., Kobayashi, Y., Goto, K., Abe, M., and Araki, T. (2005)
TWIN
SISTER OF FT (TSF) acts as a floral pathway integrator
redundantly with FT.
Plant & Cell Physiology 46 (8),
1175-1189. PubMed Free Full Text Cover 日本植物生理学会論文賞
- Endo, M., Nakamura, S., Araki, T., Mochizuki, N., and Nagatani, A.
(2005)
Phytochrome B in the mesophyll delays flowering by suppressing
FLOWERING LOCUS T expression in Arabidopsis vascular bundles.
Plant Cell 17 (7), 1941-1952. PubMed
- Takeda, S., Tadele, Z., Hofmann, I., Probst, A. V., Angelis, K. J., Kaya, H., Araki,
T., Mengiste, T., Mittelsten Scheid, O., Shibahara, K., Scheel, D. and
Paszkowski, J. (2004)
BRU1, a novel link between responses to DNA
damage and epigenetic gene silencing in Arabidopsis.
Genes &
Development 18 (7), 782-793. PubMed
- Kojima, S., Takahashi, Y., Kobayashi, Y., Monna, L., Sasaki, T., Araki, T., and
Yano, M. (2002)
Hd3a, a rice ortholog of the Arabidopsis FT
gene, promotes transition to flowering downstream of Hd1 under short-day
condition.
Plant & Cell Physiology 43 (10), 1096-1105. PubMed
Cover 日本植物生理学会論文賞
Most cited article of the journal
- Eckardt, N. A., Araki, T., Benning, C., Cubas, P., Goodrich, J. Jacobsen, S.,
Masson, P., Nambara, E., Simon, R., Somerville, S., and Wasteneys, G. (2001)
Meeting Report Arabidopsis Research 2001.
Plant Cell 13 (9),
1973-1982. PubMed
- Ohto, M., Onai, K., Furukawa, Y., Aoki, E., Araki, T. and Nakamura, K.
(2001)
Effects of sugar on vegetative development and floral transition in
Arabidopsis thaliana.
Plant Physiology 127 (1), 252-261. PubMed
- Mimida, N., Goto, K., Kobayashi, Y., Araki, T., Ahn, J. H., Weigel, D., Murata, M.,
Motoyoshi, F. and Sakamoto, W. (2001)
Functional divergence of the
TFL1-like gene family in Arabidopsis revealed by characterization
of a novel homologue.
Genes to Cells 6 (4), 327-336. PubMed
- Araki, T. (2001)
Transition from vegetative to reproductive
phase.
Current Opinion in Plant Biology 4 (1), 63-68. PubMed
- Kaya, H., Shibahara, K., Taoka, K., Iwabuchi, M., Stillman, B. and Araki, T.
(2001)
FASCIATA genes for chromatin assembly factor-1 in
Arabidopsis maintain the cellular organization of apical meristems.
Cell 104 (1), 131-142. PubMed
- Kaya, H., Sato, S., Tabata, S., Kobayashi, Y., Iwabuchi, M. and Araki, T.
(2000)
hosoba toge toge, a syndrome caused by a large chromosomal
deletion associated with a T-DNA insertion in Arabidopsis.
Plant
& Cell Physiology 41 (9), 1055-1066. PubMed
- Sakamoto, H., Araki, T., Meshi, T. and Iwabuchi, M. (2000)
Expression of a subset of the Arabidopsis Cys2/His2-type
zinc-finger protein gene family under water stress.
Gene 248 (1-2),
23-32. PubMed
- Kobayashi, Y., Kaya, H., Goto, K., Iwabuchi, M. and Araki, T. (1999)
A pair of
related genes with antagonistic roles in mediating flowering
signals.
Science 286 (5446), 1960-1962. PubMed
- Taoka, K., Kaya, H., Nakayama, T., Araki, T., Meshi, T. and Iwabuchi, M. (1999)
Identification of three kinds of mutually related composite elements
conferring S phase-specific transcriptional activation.
Plant Journal 18
(6), 611-623. PubMed
- Araki, T., Kaya, H., Kobayashi, Y. and Iwabuchi, M. (1998)
The flowering-time
gene FT and regulation of flowering in
Arabidopsis.
Journal of Plant Research 111 (1102), 277-281.
Abstract Cover